STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB28099.1Phytoene desaturase. (492 aa)    
Predicted Functional Partners:
SKB28142.1
Phytoene/squalene synthetase.
 
 0.989
SKB28092.1
Putative membrane protein.
 
  
 0.939
SKB28110.1
Beta-carotene 3-hydroxylase.
 
   
 0.886
SKB28160.1
Phytoene desaturase.
 
  
 
0.882
SKB28168.1
B12 binding domain-containing protein.
 
  
 0.862
SKB28072.1
Spheroidene monooxygenase.
 
  
 0.670
SKB66627.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
   
 0.427
SKB28260.1
AraC-type DNA-binding protein.
       0.400
Your Current Organism:
Maribacter arcticus
NCBI taxonomy Id: 561365
Other names: DSM 23546, JCM 14790, KCTC 22053, M. arcticus, Maribacter arcticus Cho et al. 2008 emend. Weerawongwiwat et al. 2013, strain KOPRI 20941
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