STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB38856.1Hypothetical protein. (66 aa)    
Predicted Functional Partners:
SKB38828.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
       0.619
SKB38869.1
Hypothetical protein.
       0.596
SKB25741.1
Lipid-binding SYLF domain-containing protein.
   
    0.495
SKB38884.1
Small conductance mechanosensitive channel.
       0.430
SKB38554.1
AsmA-like C-terminal region.
   
    0.416
SKB38817.1
Type IX secretion system membrane protein, PorP/SprF family.
       0.407
Your Current Organism:
Maribacter arcticus
NCBI taxonomy Id: 561365
Other names: DSM 23546, JCM 14790, KCTC 22053, M. arcticus, Maribacter arcticus Cho et al. 2008 emend. Weerawongwiwat et al. 2013, strain KOPRI 20941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.