STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB78836.1Iron complex transport system ATP-binding protein. (278 aa)    
Predicted Functional Partners:
SKB78868.1
Iron complex transport system substrate-binding protein.
 
 0.998
SKB78856.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
  0.966
SKB78817.1
DNA recombination protein RmuC.
       0.571
SKB51228.1
TonB-linked outer membrane protein, SusC/RagA family.
  
  
 0.536
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.528
SKB27616.1
Putative ABC transport system ATP-binding protein.
 
   
0.481
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
  
     0.474
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.439
SKB27722.1
cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
  
 
  0.424
SKB53192.1
Geranylgeranyl diphosphate synthase, type II; Belongs to the FPP/GGPP synthase family.
  
     0.424
Your Current Organism:
Maribacter arcticus
NCBI taxonomy Id: 561365
Other names: DSM 23546, JCM 14790, KCTC 22053, M. arcticus, Maribacter arcticus Cho et al. 2008 emend. Weerawongwiwat et al. 2013, strain KOPRI 20941
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.