STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG18573.1dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family. (433 aa)    
Predicted Functional Partners:
SMG18596.1
UDP-N-acetylglucosamine 4,6-dehydratase.
 
 
 0.908
SMG18588.1
Predicted dehydrogenase.
 
 
 0.897
SMG18570.1
Protein N-acetyltransferase, RimJ/RimL family.
  
 
 0.871
SMG18510.1
UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase.
  
 
 0.856
SMG18578.1
N-acylneuraminate cytidylyltransferase/pseudaminic acid cytidylyltransferase.
  
  
 0.823
SMG18483.1
Spore coat polysaccharide biosynthesis protein SpsG, predicted glycosyltransferase.
  
  
 0.808
SMG18521.1
N-acetylneuraminate synthase/N,N'-diacetyllegionaminate synthase.
  
  
 0.804
SMG28942.1
NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC.
 
 
 0.746
SMG09224.1
Predicted dehydrogenase.
 
 0.742
SMG39981.1
Nucleoside-diphosphate-sugar epimerase.
 
 
 0.730
Your Current Organism:
Dethiosulfovibrio salsuginis
NCBI taxonomy Id: 561720
Other names: D. salsuginis, DSM 21565, Dethiosulfovibrio salsuginis Diaz-Cardenas et al. 2010, Dethiosulfovibrio sp. USBA 82, KCTC 5659, strain USBA 82
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