STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG34946.1TRAP-type C4-dicarboxylate transport system, substrate-binding protein. (333 aa)    
Predicted Functional Partners:
SMG34938.1
TRAP transporter, DctM subunit.
 
 
 0.992
SMG34934.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.948
SMG38726.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.842
SMG38734.1
TRAP transporter, DctM subunit.
 
  
 0.785
SMG11061.1
C4-dicarboxylate transporter, DctQ subunit.
 
  
 0.646
SMG13882.1
TRAP transporter, DctM subunit.
 
  
 0.571
SMG13878.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.560
SMG36853.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
  
 0.536
SMG34930.1
GntR family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex.
 
     0.528
SMG30539.1
Two-component system, CitB family, sensor kinase/two-component system, CitB family, sensor histidine kinase DctS.
 
  
 0.503
Your Current Organism:
Dethiosulfovibrio salsuginis
NCBI taxonomy Id: 561720
Other names: D. salsuginis, DSM 21565, Dethiosulfovibrio salsuginis Diaz-Cardenas et al. 2010, Dethiosulfovibrio sp. USBA 82, KCTC 5659, strain USBA 82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.