STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG34971.1Uncharacterized conserved protein YutE, UPF0331/DUF86 family. (134 aa)    
Predicted Functional Partners:
SMG30051.1
Nucleotidyltransferase domain-containing protein.
   
 
 0.900
SMG35008.1
Hypothetical protein.
 
     0.885
SMG35078.1
Threonine synthase.
       0.773
SMG35081.1
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins.
       0.773
SMG35087.1
Energy coupling factor transporter S component ThiW.
       0.615
SMG35193.1
Putative hydroxymethylpyrimidine transport system substrate-binding protein.
       0.615
SMG35196.1
Putative hydroxymethylpyrimidine transport system permease protein.
       0.543
SMG35203.1
NitT/TauT family transport system ATP-binding protein.
       0.543
SMG35210.1
Thiamine transporter.
       0.543
SMG51721.1
Phage major capsid protein E.
  
     0.419
Your Current Organism:
Dethiosulfovibrio salsuginis
NCBI taxonomy Id: 561720
Other names: D. salsuginis, DSM 21565, Dethiosulfovibrio salsuginis Diaz-Cardenas et al. 2010, Dethiosulfovibrio sp. USBA 82, KCTC 5659, strain USBA 82
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