STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG36853.1TRAP-type C4-dicarboxylate transport system, small permease component. (156 aa)    
Predicted Functional Partners:
SMG36845.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.975
SMG36862.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.936
SMG11020.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.848
SMG21101.1
C4-dicarboxylate transporter, DctM subunit.
 
 0.846
SMG11081.1
C4-dicarboxylate-binding protein DctP.
 
  
 0.837
SMG21116.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.837
SMG37367.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.835
SMG50597.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.833
SMG13882.1
TRAP transporter, DctM subunit.
 
 0.825
SMG37345.1
TRAP transporter, DctM subunit.
 
 0.823
Your Current Organism:
Dethiosulfovibrio salsuginis
NCBI taxonomy Id: 561720
Other names: D. salsuginis, DSM 21565, Dethiosulfovibrio salsuginis Diaz-Cardenas et al. 2010, Dethiosulfovibrio sp. USBA 82, KCTC 5659, strain USBA 82
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.