STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG36688.1Cysteine protease, C1A family. (530 aa)    
Predicted Functional Partners:
SMG48129.1
Peptidyl-prolyl cis-trans isomerase B (cyclophilin B); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 
 0.873
SMG36683.1
Predicted secreted protein.
    
 0.871
SMG36707.1
Synergist-CTERM protein sorting domain-containing protein; Belongs to the peptidase S8 family.
 
 
 0.758
rpsK
SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
 0.627
SMG30644.1
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 0.595
SMG36676.1
LexA-binding, inner membrane-associated putative hydrolase.
       0.548
SMG36703.1
Hypothetical protein.
       0.533
SMG41173.1
Carboxypeptidase C (cathepsin A).
   
 0.526
SMG16101.1
Ankyrin repeat.
    
 0.502
SMG50314.1
Ankyrin repeat.
    
 0.502
Your Current Organism:
Dethiosulfovibrio salsuginis
NCBI taxonomy Id: 561720
Other names: D. salsuginis, DSM 21565, Dethiosulfovibrio salsuginis Diaz-Cardenas et al. 2010, Dethiosulfovibrio sp. USBA 82, KCTC 5659, strain USBA 82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.