STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG38800.1Arginine utilization protein RocB. (531 aa)    
Predicted Functional Partners:
SMG38726.1
TRAP-type C4-dicarboxylate transport system, small permease component.
       0.757
SMG38734.1
TRAP transporter, DctM subunit.
       0.757
SMG38718.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
       0.568
SMG38808.1
Endonuclease/Exonuclease/phosphatase family protein.
       0.541
SMG36734.1
Predicted arabinose efflux permease, MFS family.
  
     0.509
SMG38707.1
Transcriptional regulator, IclR family.
       0.463
SMG31812.1
Putative tricarboxylic transport membrane protein.
  
     0.439
SMG21450.1
Uncharacterized conserved protein YybS, DUF2232 family.
  
     0.422
Your Current Organism:
Dethiosulfovibrio salsuginis
NCBI taxonomy Id: 561720
Other names: D. salsuginis, DSM 21565, Dethiosulfovibrio salsuginis Diaz-Cardenas et al. 2010, Dethiosulfovibrio sp. USBA 82, KCTC 5659, strain USBA 82
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.