KJG14854.1 protein (Photobacterium iliopiscarium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Photobacterium iliopiscarium

NCBI taxonomy Id: 56192
Other names: ATCC 51760, CAIM 909, CIP 104755, DSM 9896, LMG 19543, LMG:19543, P. iliopiscarium, Vibrio iliopiscarius, strain PS1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJG12189.1	KJG14845.1	UB38_16960	UB38_00505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
KJG12189.1	KJG14852.1	UB38_16960	UB38_00550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
KJG12189.1	KJG14853.1	UB38_16960	UB38_00555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
KJG12189.1	KJG14854.1	UB38_16960	UB38_00560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.985
KJG12189.1	KJG14856.1	UB38_16960	UB38_00570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
KJG12189.1	KJG14861.1	UB38_16960	UB38_00595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.976
KJG12189.1	flgC	UB38_16960	UB38_00495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.952
KJG12189.1	flgL	UB38_16960	UB38_00545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
KJG12189.1	fliE	UB38_16960	UB38_00590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KJG12189.1	fliI	UB38_16960	UB38_00610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
KJG14845.1	KJG12189.1	UB38_00505	UB38_16960	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
KJG14845.1	KJG14852.1	UB38_00505	UB38_00550	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
KJG14845.1	KJG14854.1	UB38_00505	UB38_00560	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.995
KJG14845.1	KJG14856.1	UB38_00505	UB38_00570	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar biosynthesis protein FliS; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
KJG14845.1	KJG14861.1	UB38_00505	UB38_00595	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.998
KJG14845.1	flgC	UB38_00505	UB38_00495	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar basal body rod protein FlgC; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the flagella basal body rod proteins family.	0.999
KJG14845.1	flgL	UB38_00505	UB38_00545	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
KJG14845.1	fliE	UB38_00505	UB38_00590	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
KJG14845.1	fliI	UB38_00505	UB38_00610	Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP synthase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KJG14852.1	KJG12189.1	UB38_00550	UB38_16960	Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896