KJG14691.1 protein (Photobacterium iliopiscarium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Photobacterium iliopiscarium

NCBI taxonomy Id: 56192
Other names: ATCC 51760, CAIM 909, CIP 104755, DSM 9896, LMG 19543, LMG:19543, P. iliopiscarium, Vibrio iliopiscarius, strain PS1

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJG12955.1	KJG14691.1	UB38_12125	UB38_01985	TnaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KJG13861.1	KJG14691.1	UB38_06920	UB38_01985	virK protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
KJG13932.1	KJG13991.1	UB38_06525	UB38_05375	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	DNA polymerase sliding clamp subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	0.761
KJG13932.1	KJG14691.1	UB38_06525	UB38_01985	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KJG13991.1	KJG13932.1	UB38_05375	UB38_06525	DNA polymerase sliding clamp subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	0.761
KJG13991.1	KJG14691.1	UB38_05375	UB38_01985	DNA polymerase sliding clamp subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
KJG14646.1	KJG14691.1	UB38_01705	UB38_01985	Tyrosine transporter TyrP; Tyrosine specific permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
KJG14690.1	KJG14691.1	UB38_01980	UB38_01985	Serine dehydratase; Catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family.	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
KJG14690.1	KJG14692.1	UB38_01980	UB38_01990	Serine dehydratase; Catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family.	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
KJG14691.1	KJG12955.1	UB38_01985	UB38_12125	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TnaB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KJG14691.1	KJG13861.1	UB38_01985	UB38_06920	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	virK protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
KJG14691.1	KJG13932.1	UB38_01985	UB38_06525	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	0.640
KJG14691.1	KJG13991.1	UB38_01985	UB38_05375	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase sliding clamp subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.	0.640
KJG14691.1	KJG14646.1	UB38_01985	UB38_01705	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tyrosine transporter TyrP; Tyrosine specific permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
KJG14691.1	KJG14690.1	UB38_01985	UB38_01980	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine dehydratase; Catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.670
KJG14691.1	KJG14692.1	UB38_01985	UB38_01990	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KJG14691.1	KJG14762.1	UB38_01985	UB38_02065	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
KJG14691.1	pabB	UB38_01985	UB38_01995	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Para-aminobenzoate synthase component 1; catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and L-glutamine; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
KJG14692.1	KJG14690.1	UB38_01990	UB38_01980	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine dehydratase; Catalyzes the formation of pyruvate from serine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron-sulfur dependent L-serine dehydratase family.	0.580
KJG14692.1	KJG14691.1	UB38_01990	UB38_01985	DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Septum formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548