Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
KJG14482.1Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)    
Predicted Functional Partners:
KJG12684.1
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.511
KJG14481.1
ErfK/YbiS/YcfS/YnhG family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.492
KJG14483.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KJG14484.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KJG14602.1
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KJG14485.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.433
KJG13431.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.424
Your Current Organism:
Photobacterium iliopiscarium
NCBI taxonomy Id: 56192
Other names: ATCC 51760, CAIM 909, CIP 104755, DSM 9896, LMG 19543, LMG:19543, P. iliopiscarium, Vibrio iliopiscarius, strain PS1
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