Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KJG14559.1Cytosolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
KJG14556.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.961
KJG14560.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.955
KJG14557.1
IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.952
KJG14558.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.929
KJG13898.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.837
KJG13894.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.809
KJG13897.1
Aerotolerance regulator BatA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.799
KJG13899.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.759
Your Current Organism:
Photobacterium iliopiscarium
NCBI taxonomy Id: 56192
Other names: ATCC 51760, CAIM 909, CIP 104755, DSM 9896, LMG 19543, LMG:19543, P. iliopiscarium, Vibrio iliopiscarius, strain PS1
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