KJG14575.1 protein (Photobacterium iliopiscarium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Photobacterium iliopiscarium

NCBI taxonomy Id: 56192
Other names: ATCC 51760, CAIM 909, CIP 104755, DSM 9896, LMG 19543, LMG:19543, P. iliopiscarium, Vibrio iliopiscarius, strain PS1

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJG13153.1	KJG14575.1	UB38_10975	UB38_03050	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alkaline phosphatase family.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.494
KJG13577.1	KJG14574.1	UB38_08795	UB38_03045	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KJG13577.1	KJG14575.1	UB38_08795	UB38_03050	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
KJG14573.1	KJG14574.1	UB38_03040	UB38_03045	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KJG14573.1	KJG14575.1	UB38_03040	UB38_03050	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KJG14573.1	KJG14610.1	UB38_03040	UB38_03055	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KJG14573.1	KJG14840.1	UB38_03040	UB38_00480	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.521
KJG14574.1	KJG13577.1	UB38_03045	UB38_08795	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KJG14574.1	KJG14573.1	UB38_03045	UB38_03040	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KJG14574.1	KJG14575.1	UB38_03045	UB38_03050	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KJG14574.1	KJG14610.1	UB38_03045	UB38_03055	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KJG14574.1	KJG14840.1	UB38_03045	UB38_00480	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
KJG14575.1	KJG13153.1	UB38_03050	UB38_10975	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the alkaline phosphatase family.	0.494
KJG14575.1	KJG13577.1	UB38_03050	UB38_08795	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
KJG14575.1	KJG14573.1	UB38_03050	UB38_03040	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KJG14575.1	KJG14574.1	UB38_03050	UB38_03045	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KJG14575.1	KJG14610.1	UB38_03050	UB38_03055	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KJG14575.1	KJG14840.1	UB38_03050	UB38_00480	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
KJG14575.1	malE	UB38_03050	UB38_13075	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Part of the ABC transporter complex MalEFGK involved in maltose/maltodextrin import. Binds maltose and higher maltodextrins. Belongs to the bacterial solute-binding protein 1 family.	0.670
KJG14575.1	malF	UB38_03050	UB38_13080	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Maltose transporter membrane protein; With MalKGE is involved in maltose transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994