KJG14610.1 protein (Photobacterium iliopiscarium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Photobacterium iliopiscarium

NCBI taxonomy Id: 56192
Other names: ATCC 51760, CAIM 909, CIP 104755, DSM 9896, LMG 19543, LMG:19543, P. iliopiscarium, Vibrio iliopiscarius, strain PS1

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJG12772.1	KJG14610.1	UB38_13185	UB38_03055	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
KJG13812.1	KJG14610.1	UB38_07060	UB38_03055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
KJG13812.1	cysJ	UB38_07060	UB38_16635	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfite reductase subunit alpha; Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH -> FAD -> FMN to the hemoprotein component. Belongs to the NADPH-dependent sulphite reductase flavoprotein subunit CysJ family. In the N-terminal section; belongs to the flavodoxin family.	0.615
KJG14504.1	KJG14610.1	UB38_02545	UB38_03055	Molybdopterin adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
KJG14573.1	KJG14574.1	UB38_03040	UB38_03045	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KJG14573.1	KJG14575.1	UB38_03040	UB38_03050	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KJG14573.1	KJG14610.1	UB38_03040	UB38_03055	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KJG14574.1	KJG14573.1	UB38_03045	UB38_03040	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KJG14574.1	KJG14575.1	UB38_03045	UB38_03050	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KJG14574.1	KJG14610.1	UB38_03045	UB38_03055	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KJG14575.1	KJG14573.1	UB38_03050	UB38_03040	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KJG14575.1	KJG14574.1	UB38_03050	UB38_03045	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KJG14575.1	KJG14610.1	UB38_03050	UB38_03055	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KJG14610.1	KJG12772.1	UB38_03055	UB38_13185	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]	0.612
KJG14610.1	KJG13812.1	UB38_03055	UB38_07060	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
KJG14610.1	KJG14504.1	UB38_03055	UB38_02545	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Molybdopterin adenylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.706
KJG14610.1	KJG14573.1	UB38_03055	UB38_03040	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KJG14610.1	KJG14574.1	UB38_03055	UB38_03045	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KJG14610.1	KJG14575.1	UB38_03055	UB38_03050	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KJG14610.1	KJG14804.1	UB38_03055	UB38_00215	Carboxylesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0255 family.	0.516