Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KJG13590.1Major exported protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)    
Predicted Functional Partners:
tssC
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.952
tssG
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.861
icmF
Type VI secretion protein IcmF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.848
tssA
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.817
tssE
Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.797
KJG11045.1
Major exported protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.786
tssJ
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.780
vasA
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.772
tssK
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.772
KJG11064.1
Type VI secretion protein VgrG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.757
Your Current Organism:
Photobacterium iliopiscarium
NCBI taxonomy Id: 56192
Other names: ATCC 51760, CAIM 909, CIP 104755, DSM 9896, LMG 19543, LMG:19543, P. iliopiscarium, Vibrio iliopiscarius, strain PS1
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