Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KKW93571.1Protein-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)    
Predicted Functional Partners:
KKW94146.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.816
KKW93292.1
Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.799
KKW94147.1
Protein-disulfide isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.794
smc
Chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family.
       0.665
KKW93647.1
Cell envelope biogenesis protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.661
recO
DNA recombination protein RecO; Involved in DNA repair and RecF pathway recombination.
  
  
 0.659
KKW92619.1
DNA helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the helicase family. UvrD subfamily.
 
     0.653
KKW93570.1
Adenine glycosylase; Adenine glycosylase active on G-A mispairs.
     
 0.616
KKW92149.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.593
KKW92360.1
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.586
Your Current Organism:
Sphingobium chungbukense
NCBI taxonomy Id: 56193
Other names: IMSNU 11152, JCM 11454, KCTC 2955, Pseudomonas sp. DJ77, S. chungbukense, Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, Sphingomonas chungbukensis, Sphingomonas chungbukensis Kim et al. 2000, Sphingomonas sp. DJ77, strain DJ77
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