Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KKW93691.1Plasmid stabilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)    
Predicted Functional Partners:
KKW93692.1
Antitoxin, Phd family protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
     0.964
KKW91072.1
Addiction module antidote protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.792
KKW89929.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.660
KKW91073.1
ParD protein (antitoxin to ParE); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.653
KKW90586.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.653
KKW89310.1
ParD protein (antitoxin to ParE); Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.653
KKW92963.1
Stability determinant; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.603
KKW90551.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
Your Current Organism:
Sphingobium chungbukense
NCBI taxonomy Id: 56193
Other names: IMSNU 11152, JCM 11454, KCTC 2955, Pseudomonas sp. DJ77, S. chungbukense, Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, Sphingomonas chungbukensis, Sphingomonas chungbukensis Kim et al. 2000, Sphingomonas sp. DJ77, strain DJ77
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