Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KKW93726.1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)    
Predicted Functional Partners:
KKW93728.1
Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.862
KKW92931.1
Exoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.705
ftsE
Cell division protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
       0.674
KKW93729.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.674
KKW93730.1
Glycerol acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.663
KKW90075.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.646
KKW91207.1
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
KKW89400.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.604
KKW94128.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.596
KKW94171.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.562
Your Current Organism:
Sphingobium chungbukense
NCBI taxonomy Id: 56193
Other names: IMSNU 11152, JCM 11454, KCTC 2955, Pseudomonas sp. DJ77, S. chungbukense, Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, Sphingomonas chungbukensis, Sphingomonas chungbukensis Kim et al. 2000, Sphingomonas sp. DJ77, strain DJ77
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