Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KKW93924.1Type IV secretory pathway VirJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)    
Predicted Functional Partners:
KKW93925.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.643
KKW94188.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.576
KKW93923.1
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.543
KKW93922.1
Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
KKW94187.1
Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; possibly involved in prevention of copper toxicity; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.540
KKW93920.1
Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.428
Your Current Organism:
Sphingobium chungbukense
NCBI taxonomy Id: 56193
Other names: IMSNU 11152, JCM 11454, KCTC 2955, Pseudomonas sp. DJ77, S. chungbukense, Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, Sphingomonas chungbukensis, Sphingomonas chungbukensis Kim et al. 2000, Sphingomonas sp. DJ77, strain DJ77
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