STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKW90768.1RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)    
Predicted Functional Partners:
KKW90770.1
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.914
KKW89955.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.879
KKW90769.1
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily.
 
  0.861
KKW91961.1
Acriflavine resistance protein E; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.792
KKW93074.1
Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.785
KKW91960.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.773
KKW92836.1
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.768
KKW91487.1
Secretion protein HylD; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  0.767
KKW91488.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.764
KKW93553.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.651
Your Current Organism:
Sphingobium chungbukense
NCBI taxonomy Id: 56193
Other names: IMSNU 11152, JCM 11454, KCTC 2955, Pseudomonas sp. DJ77, S. chungbukense, Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, Sphingomonas chungbukensis, Sphingomonas chungbukensis Kim et al. 2000, Sphingomonas sp. DJ77, strain DJ77
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