STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KKW90324.1Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology. (770 aa)    
Predicted Functional Partners:
KKW90325.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.949
KKW90323.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.782
KKW90515.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.775
KKW89717.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.775
KKW91064.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.749
KKW92503.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.747
KKW89341.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.740
KKW90404.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.738
KKW90561.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
KKW90790.1
Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.730
Your Current Organism:
Sphingobium chungbukense
NCBI taxonomy Id: 56193
Other names: IMSNU 11152, JCM 11454, KCTC 2955, Pseudomonas sp. DJ77, S. chungbukense, Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, Sphingomonas chungbukensis, Sphingomonas chungbukensis Kim et al. 2000, Sphingomonas sp. DJ77, strain DJ77
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.