Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KKW90324.1Conjugal transfer protein TraD; Derived by automated computational analysis using gene prediction method: Protein Homology. (770 aa)    
Predicted Functional Partners:
KKW90325.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.948
KKW90323.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.779
KKW90515.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.774
KKW89717.1
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.774
KKW91064.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.748
KKW92503.1
DNA relaxase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.746
KKW89341.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.739
KKW90404.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
KKW90561.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.736
KKW90790.1
Conjugal transfer protein TraH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.729
Your Current Organism:
Sphingobium chungbukense
NCBI taxonomy Id: 56193
Other names: IMSNU 11152, JCM 11454, KCTC 2955, Pseudomonas sp. DJ77, S. chungbukense, Sphingobium chungbukense (Kim et al. 2000) Pal et al. 2005, Sphingomonas chungbukensis, Sphingomonas chungbukensis Kim et al. 2000, Sphingomonas sp. DJ77, strain DJ77
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