STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhbHRibosome-associated, sigma 54 modulation protein; Function of strongly homologous gene; factor. (95 aa)    
Predicted Functional Partners:
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes). May form immature 90S particles, which are converted to mature 100S ribosomes by the hibernation promoting factor Hpf.
   
 
 0.987
rpmH
50S ribosomal subunit protein L34; Function experimentally demonstrated in the studied species; structure.
   
 
 0.918
rpmI
50S ribosomal subunit protein L35; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bL35 family.
 
 
   0.910
rpsI
30S ribosomal subunit protein S9; Function experimentally demonstrated in the studied species; structure; Belongs to the universal ribosomal protein uS9 family.
 
 
 
 0.909
rplU
50S ribosomal subunit protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
   0.902
rplM
50S ribosomal subunit protein L13; Function experimentally demonstrated in the studied species; structure.
 
   0.901
rpsU
30S ribosomal subunit protein S21; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.900
rpmA
50S ribosomal subunit protein L27; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.897
rpmG
50S ribosomal subunit protein L33; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bL33 family.
   
   0.897
rpmB
50S ribosomal subunit protein L28; Function experimentally demonstrated in the studied species; structure; Belongs to the bacterial ribosomal protein bL28 family.
   
   0.897
Your Current Organism:
Escherichia coli IAI1
NCBI taxonomy Id: 585034
Other names: E. coli IAI1, Escherichia coli str. IAI1, Escherichia coli strain IAI1
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