STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6R68_10307CCHC-type domain-containing protein. (275 aa)    
Predicted Functional Partners:
A6R68_03431
Helicase C-terminal domain-containing protein.
   
 
 0.761
A6R68_09588
Uncharacterized protein.
 
      0.742
A6R68_04205
NTP_transf_2 domain-containing protein.
   
 
 0.723
A6R68_23617
Uncharacterized protein.
   
 
 0.701
A6R68_00590
Uncharacterized protein.
   
   0.693
A6R68_15944
Brix domain-containing protein.
   
   0.693
A6R68_03259
CPL domain-containing protein.
   
   0.689
A6R68_00512
PPIase cyclophilin-type domain-containing protein.
  
 
  0.673
A6R68_08777
Uncharacterized protein.
   
 
 0.666
A6R68_06952
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
   0.665
Your Current Organism:
Neotoma lepida
NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat
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