Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A6R68_09951Uncharacterized protein. (1114 aa)    
Predicted Functional Partners:
A6R68_10048
Uncharacterized protein.
   
 0.937
A6R68_22373
Uncharacterized protein.
 
     0.931
A6R68_07792
Uncharacterized protein.
 
     0.926
A6R68_18876
Uncharacterized protein.
   
 0.914
A6R68_20098
Uncharacterized protein.
 
    
0.909
A6R68_08812
Uncharacterized protein.
   
 0.908
A6R68_18329
Uncharacterized protein.
 
     
0.899
A6R68_05907
Ig-like domain-containing protein.
 
    
0.892
A6R68_07092
Uncharacterized protein.
   
 0.874
A6R68_06327
Uncharacterized protein.
   
 0.873
Your Current Organism:
Neotoma lepida
NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat
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