STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6R68_07956WW domain-containing protein. (787 aa)    
Predicted Functional Partners:
A6R68_10612
RNase III domain-containing protein.
   
 0.978
A6R68_15313
Uncharacterized protein.
   
 0.978
A6R68_08115
RNase III domain-containing protein.
    
 0.913
A6R68_04912
Uncharacterized protein.
    
 0.913
A6R68_04008
Helicase C-terminal domain-containing protein.
    
 0.913
A6R68_17119
ResIII domain-containing protein.
    
 0.913
A6R68_22559
Uncharacterized protein.
    
 0.913
A6R68_15636
Uncharacterized protein.
    
 0.909
A6R68_05004
Methyl-CpG-binding protein 2; Chromosomal protein that binds to methylated DNA. It can bind specifically to a single methyl-CpG pair. It is not influenced by sequences flanking the methyl-CpGs. Binds both 5-methylcytosine (5mC) and 5-hydroxymethylcytosine (5hmC)-containing DNA, with a preference for 5-methylcytosine (5mC).
   
 0.834
A6R68_02036
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 
 0.820
Your Current Organism:
Neotoma lepida
NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat
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