STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6R68_07532KRAB domain-containing protein. (198 aa)    
Predicted Functional Partners:
A6R68_19060
Uncharacterized protein.
    
  0.856
A6R68_05090
Guanylate kinase-like domain-containing protein.
    
 0.824
A6R68_06459
Uncharacterized protein.
    
  0.805
A6R68_07482
Uncharacterized protein.
    
 0.799
A6R68_01920
SUFU_C domain-containing protein.
   
  0.794
A6R68_01969
Uncharacterized protein.
   
  0.794
A6R68_00569
Uncharacterized protein.
    
  0.793
A6R68_03300
Uncharacterized protein.
    
 0.781
A6R68_10502
Sin3a_C domain-containing protein.
    
 0.780
A6R68_04361
HDAC_interact domain-containing protein.
    
 0.780
Your Current Organism:
Neotoma lepida
NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.