A6R68_06419 protein (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A6R68_06419

TFIIB-type domain-containing protein. (570 aa)

Predicted Functional Partners:

A6R68_09628

0.980

A6R68_16754

0.978

A6R68_06979

0.970

A6R68_04973

0.970

A6R68_01154

0.964

A6R68_01153

0.964

A6R68_10470

0.960

A6R68_17257

0.958

A6R68_04819

0.954

A6R68_04817

0.954

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_01153	A6R68_01154	A0A1A6GY84	A0A1A6GVE4	Uncharacterized protein.	Uncharacterized protein.	0.799
A6R68_01153	A6R68_04817	A0A1A6GY84	A0A1A6GL89	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.935
A6R68_01153	A6R68_04819	A0A1A6GY84	A0A1A6GK97	Uncharacterized protein.	Uncharacterized protein.	0.935
A6R68_01153	A6R68_04973	A0A1A6GY84	A0A1A6GJU6	Uncharacterized protein.	Uncharacterized protein.	0.965
A6R68_01153	A6R68_06419	A0A1A6GY84	A0A1A6GH03	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.964
A6R68_01153	A6R68_06979	A0A1A6GY84	A0A1A6GGS0	Uncharacterized protein.	Uncharacterized protein.	0.973
A6R68_01153	A6R68_09628	A0A1A6GY84	A0A1A6FZA9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.960
A6R68_01153	A6R68_10470	A0A1A6GY84	A0A1A6FXW4	Uncharacterized protein.	RPOLD domain-containing protein.	0.940
A6R68_01153	A6R68_16754	A0A1A6GY84	A0A1A6HEY1	Uncharacterized protein.	Uncharacterized protein.	0.978
A6R68_01153	A6R68_17257	A0A1A6GY84	A0A1A6HDC9	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
A6R68_01154	A6R68_01153	A0A1A6GVE4	A0A1A6GY84	Uncharacterized protein.	Uncharacterized protein.	0.799
A6R68_01154	A6R68_04817	A0A1A6GVE4	A0A1A6GL89	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNA polymerase beta chain family.	0.935
A6R68_01154	A6R68_04819	A0A1A6GVE4	A0A1A6GK97	Uncharacterized protein.	Uncharacterized protein.	0.935
A6R68_01154	A6R68_04973	A0A1A6GVE4	A0A1A6GJU6	Uncharacterized protein.	Uncharacterized protein.	0.965
A6R68_01154	A6R68_06419	A0A1A6GVE4	A0A1A6GH03	Uncharacterized protein.	TFIIB-type domain-containing protein.	0.964
A6R68_01154	A6R68_06979	A0A1A6GVE4	A0A1A6GGS0	Uncharacterized protein.	Uncharacterized protein.	0.973
A6R68_01154	A6R68_09628	A0A1A6GVE4	A0A1A6FZA9	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.960
A6R68_01154	A6R68_10470	A0A1A6GVE4	A0A1A6FXW4	Uncharacterized protein.	RPOLD domain-containing protein.	0.940
A6R68_01154	A6R68_16754	A0A1A6GVE4	A0A1A6HEY1	Uncharacterized protein.	Uncharacterized protein.	0.978
A6R68_01154	A6R68_17257	A0A1A6GVE4	A0A1A6HDC9	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965