A6R68_05015 protein (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A6R68_05015

Uncharacterized protein. (277 aa)

Predicted Functional Partners:

A6R68_20654

0.922

A6R68_10053

0.921

A6R68_04358

0.910

A6R68_12677

0.908

A6R68_15462

0.901

A6R68_18811

0.893

A6R68_06948

0.882

A6R68_03211

0.864

A6R68_23184

0.816

A6R68_13436

0.800

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_03211	A6R68_04358	A0A1A6GPX5	A0A1A6GP01	UDENN domain-containing protein.	COMM domain-containing protein.	0.839
A6R68_03211	A6R68_05015	A0A1A6GPX5	A0A1A6GM79	UDENN domain-containing protein.	Uncharacterized protein.	0.864
A6R68_03211	A6R68_06948	A0A1A6GPX5	A0A1A6GE44	UDENN domain-containing protein.	COMM domain-containing protein.	0.834
A6R68_03211	A6R68_10053	A0A1A6GPX5	A0A1A6FY60	UDENN domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.931
A6R68_03211	A6R68_12677	A0A1A6GPX5	A0A1A6H2C8	UDENN domain-containing protein.	KOG2701 domain-containing protein.	0.864
A6R68_03211	A6R68_13436	A0A1A6GPX5	A0A1A6H0T2	UDENN domain-containing protein.	COMM domain-containing protein.	0.775
A6R68_03211	A6R68_15462	A0A1A6GPX5	A0A1A6H8R8	UDENN domain-containing protein.	COMM domain-containing protein.	0.832
A6R68_03211	A6R68_18811	A0A1A6GPX5	A0A1A6HM70	UDENN domain-containing protein.	COMMD1_N domain-containing protein.	0.862
A6R68_03211	A6R68_20654	A0A1A6GPX5	A0A1A6HTS7	UDENN domain-containing protein.	Uncharacterized protein.	0.881
A6R68_03211	A6R68_23184	A0A1A6GPX5	A0A1A6HYN5	UDENN domain-containing protein.	Uncharacterized protein.	0.775
A6R68_04358	A6R68_03211	A0A1A6GP01	A0A1A6GPX5	COMM domain-containing protein.	UDENN domain-containing protein.	0.839
A6R68_04358	A6R68_05015	A0A1A6GP01	A0A1A6GM79	COMM domain-containing protein.	Uncharacterized protein.	0.910
A6R68_04358	A6R68_06948	A0A1A6GP01	A0A1A6GE44	COMM domain-containing protein.	COMM domain-containing protein.	0.977
A6R68_04358	A6R68_10053	A0A1A6GP01	A0A1A6FY60	COMM domain-containing protein.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.821
A6R68_04358	A6R68_12677	A0A1A6GP01	A0A1A6H2C8	COMM domain-containing protein.	KOG2701 domain-containing protein.	0.904
A6R68_04358	A6R68_13436	A0A1A6GP01	A0A1A6H0T2	COMM domain-containing protein.	COMM domain-containing protein.	0.967
A6R68_04358	A6R68_15462	A0A1A6GP01	A0A1A6H8R8	COMM domain-containing protein.	COMM domain-containing protein.	0.961
A6R68_04358	A6R68_18811	A0A1A6GP01	A0A1A6HM70	COMM domain-containing protein.	COMMD1_N domain-containing protein.	0.964
A6R68_04358	A6R68_20654	A0A1A6GP01	A0A1A6HTS7	COMM domain-containing protein.	Uncharacterized protein.	0.979
A6R68_04358	A6R68_23184	A0A1A6GP01	A0A1A6HYN5	COMM domain-containing protein.	Uncharacterized protein.	0.962