STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A6R68_01405Uncharacterized protein. (792 aa)    
Predicted Functional Partners:
A6R68_12858
JmjC domain-containing protein.
     
 0.849
A6R68_03716
Hist_deacetyl domain-containing protein.
    
 0.819
A6R68_14131
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.819
A6R68_21715
Uncharacterized protein.
    
 0.819
A6R68_03235
Hist_deacetyl domain-containing protein.
    
 0.807
A6R68_08933
Uncharacterized protein.
    
 0.802
A6R68_03223
Uncharacterized protein.
    
 0.802
A6R68_10689
Hist_deacetyl domain-containing protein.
    
 0.800
A6R68_04999
Uncharacterized protein.
    
 
 0.797
A6R68_06058
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.794
Your Current Organism:
Neotoma lepida
NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.