A6R68_00621 protein (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A6R68_00621

Uncharacterized protein. (605 aa)

Predicted Functional Partners:

A6R68_13428

0.986

A6R68_13427

0.986

A6R68_11544

0.951

A6R68_14095

0.951

A6R68_14297

0.950

A6R68_01310

0.945

A6R68_09414

0.942

A6R68_08866

0.932

A6R68_04385

0.932

A6R68_23848

0.932

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_00621	A6R68_01310	A0A1A6GXZ5	A0A1A6GW20	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.945
A6R68_00621	A6R68_04385	A0A1A6GXZ5	A0A1A6GLB8	Uncharacterized protein.	Fibroblast growth factor receptor.	0.932
A6R68_00621	A6R68_08866	A0A1A6GXZ5	A0A1A6G2D5	Uncharacterized protein.	Fibroblast growth factor receptor.	0.932
A6R68_00621	A6R68_09414	A0A1A6GXZ5	A0A1A6G0X4	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.942
A6R68_00621	A6R68_11544	A0A1A6GXZ5	A0A1A6FUU0	Uncharacterized protein.	Uncharacterized protein.	0.951
A6R68_00621	A6R68_13427	A0A1A6GXZ5	A0A1A6H2F7	Uncharacterized protein.	Uncharacterized protein.	0.986
A6R68_00621	A6R68_13428	A0A1A6GXZ5	A0A1A6H0U2	Uncharacterized protein.	Ig-like domain-containing protein.	0.986
A6R68_00621	A6R68_14095	A0A1A6GXZ5	A0A1A6H9X2	Uncharacterized protein.	Protein kinase domain-containing protein.	0.951
A6R68_00621	A6R68_14297	A0A1A6GXZ5	A0A1A6H976	Uncharacterized protein.	Uncharacterized protein.	0.950
A6R68_00621	A6R68_23848	A0A1A6GXZ5	A0A1A6HVX2	Uncharacterized protein.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.932
A6R68_01310	A6R68_00621	A0A1A6GW20	A0A1A6GXZ5	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.945
A6R68_01310	A6R68_04385	A0A1A6GW20	A0A1A6GLB8	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Fibroblast growth factor receptor.	0.748
A6R68_01310	A6R68_08866	A0A1A6GW20	A0A1A6G2D5	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Fibroblast growth factor receptor.	0.712
A6R68_01310	A6R68_09414	A0A1A6GW20	A0A1A6G0X4	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.610
A6R68_01310	A6R68_11544	A0A1A6GW20	A0A1A6FUU0	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.847
A6R68_01310	A6R68_13427	A0A1A6GW20	A0A1A6H2F7	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.717
A6R68_01310	A6R68_13428	A0A1A6GW20	A0A1A6H0U2	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Ig-like domain-containing protein.	0.717
A6R68_01310	A6R68_14095	A0A1A6GW20	A0A1A6H9X2	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Protein kinase domain-containing protein.	0.607
A6R68_01310	A6R68_14297	A0A1A6GW20	A0A1A6H976	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.937
A6R68_01310	A6R68_23848	A0A1A6GW20	A0A1A6HVX2	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.	0.860