A6R68_12325 protein (Neotoma lepida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A6R68_12325

Uncharacterized protein. (2508 aa)

Predicted Functional Partners:

A6R68_23564

0.644

A6R68_07878

0.573

A6R68_05326

0.573

A6R68_03080

0.573

A6R68_18667

0.573

A6R68_18661

0.573

A6R68_01351

0.565

A6R68_22408

0.563

A6R68_02985

0.495

A6R68_23188

0.458

Your Current Organism:

Neotoma lepida

NCBI taxonomy Id: 56216
Other names: N. lepida, desert woodrat

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A6R68_01351	A6R68_12325	A0A1A6GXN5	A0A1A6H3E7	Uncharacterized protein.	Uncharacterized protein.	0.565
A6R68_01351	A6R68_23188	A0A1A6GXN5	A0A1A6HX54	Uncharacterized protein.	Olfactomedin-like domain-containing protein.	0.497
A6R68_02985	A6R68_03080	A0A1A6GS32	A0A1A6GR74	Uncharacterized protein.	RunxI domain-containing protein.	0.428
A6R68_02985	A6R68_05326	A0A1A6GS32	A0A1A6GJU1	Uncharacterized protein.	Runt domain-containing protein.	0.428
A6R68_02985	A6R68_07878	A0A1A6GS32	A0A1A6GBL0	Uncharacterized protein.	Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.	0.428
A6R68_02985	A6R68_12325	A0A1A6GS32	A0A1A6H3E7	Uncharacterized protein.	Uncharacterized protein.	0.495
A6R68_02985	A6R68_18661	A0A1A6GS32	A0A1A6HMK6	Uncharacterized protein.	Runt domain-containing protein.	0.428
A6R68_02985	A6R68_18667	A0A1A6GS32	A0A1A6HK97	Uncharacterized protein.	RunxI domain-containing protein.	0.428
A6R68_03080	A6R68_02985	A0A1A6GR74	A0A1A6GS32	RunxI domain-containing protein.	Uncharacterized protein.	0.428
A6R68_03080	A6R68_05326	A0A1A6GR74	A0A1A6GJU1	RunxI domain-containing protein.	Runt domain-containing protein.	0.439
A6R68_03080	A6R68_12325	A0A1A6GR74	A0A1A6H3E7	RunxI domain-containing protein.	Uncharacterized protein.	0.573
A6R68_03080	A6R68_18661	A0A1A6GR74	A0A1A6HMK6	RunxI domain-containing protein.	Runt domain-containing protein.	0.888
A6R68_03080	A6R68_23564	A0A1A6GR74	A0A1A6HXK8	RunxI domain-containing protein.	TGF_BETA_2 domain-containing protein.	0.712
A6R68_05326	A6R68_02985	A0A1A6GJU1	A0A1A6GS32	Runt domain-containing protein.	Uncharacterized protein.	0.428
A6R68_05326	A6R68_03080	A0A1A6GJU1	A0A1A6GR74	Runt domain-containing protein.	RunxI domain-containing protein.	0.439
A6R68_05326	A6R68_12325	A0A1A6GJU1	A0A1A6H3E7	Runt domain-containing protein.	Uncharacterized protein.	0.573
A6R68_05326	A6R68_18667	A0A1A6GJU1	A0A1A6HK97	Runt domain-containing protein.	RunxI domain-containing protein.	0.910
A6R68_05326	A6R68_23564	A0A1A6GJU1	A0A1A6HXK8	Runt domain-containing protein.	TGF_BETA_2 domain-containing protein.	0.712
A6R68_07878	A6R68_02985	A0A1A6GBL0	A0A1A6GS32	Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.	Uncharacterized protein.	0.428
A6R68_07878	A6R68_12325	A0A1A6GBL0	A0A1A6H3E7	Runt-related transcription factor; Forms the heterodimeric complex core-binding factor (CBF) with CBFB. RUNX members modulate the transcription of their target genes through recognizing the core consensus binding sequence 5'- TGTGGT-3', or very rarely, 5'-TGCGGT-3', within their regulatory regions via their runt domain, while CBFB is a non-DNA-binding regulatory subunit that allosterically enhances the sequence-specific DNA-binding capacity of RUNX.	Uncharacterized protein.	0.573