STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YUC11Putative indole-3-pyruvate monooxygenase YUCCA11. (672 aa)    
Predicted Functional Partners:
atp2
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.528
atp-3
ATP synthase subunit 4, mitochondrial.
   
   0.527
atp-1
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
   0.517
cdc4
Myosin regulatory light chain cdc4.
    
 
 0.498
CMD1
Calmodulin; Belongs to the calmodulin family.
    
 
 0.498
STK32A_1
Serine/threonine-protein kinase 32A; Belongs to the protein kinase superfamily.
    
  0.481
RPS6KB1
Ribosomal protein S6 kinase beta-1.
    
  0.481
pkbA_1
RAC family serine/threonine-protein kinase.
    
  0.481
sck1
Non-specific serine/threonine protein kinase.
    
  0.481
A0H81_09411
Cytochrome b561 domain-containing protein.
    
  0.481
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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