STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lsk1CTD kinase subunit alpha. (304 aa)    
Predicted Functional Partners:
pch1
Cyclin pch1; Belongs to the cyclin family.
    
 0.959
lsc1
CTD kinase subunit beta; Belongs to the cyclin family.
    
 0.942
ctk3
CTD kinase subunit gamma.
    
 
 0.918
A0H81_00207
RNA_pol_Rpb1_1 domain-containing protein.
    
 0.907
rpb1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.907
crk1
Serine/threonine-protein kinase crk1.
  
 
0.813
Spt5
Transcription elongation factor SPT5.
    
 0.805
SUPT5H
Transcription elongation factor SPT5.
    
 0.805
supt5h
Transcription elongation factor SPT5.
    
 0.805
A0H81_08750
Uncharacterized protein.
    
 0.805
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.