STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vprMinor extracellular protease vpr; Belongs to the peptidase S8 family. (781 aa)    
Predicted Functional Partners:
nuc-2
Ankyrin repeat protein nuc-2.
    
 0.712
NOP58
Nucleolar protein 58.
    
  0.668
utp5
U3 small nucleolar RNA-associated protein 5.
    
 0.663
utp4
U3 small nucleolar RNA-associated protein 4.
    
  0.649
wdr75
WD repeat-containing protein 75.
   
  0.644
utp20
U3 small nucleolar RNA-associated protein 20.
   
  0.640
NEP1
Ribosomal RNA small subunit methyltransferase NEP1.
    
  0.621
A0H81_11683
Putative U3 small nucleolar RNA-associated protein 11.
    
  0.621
rps7
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.621
DCAF13
DDB1-and CUL4-associated factor 13.
    
  0.621
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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