STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD3ASmall nuclear ribonucleoprotein Sm D3. (179 aa)    
Predicted Functional Partners:
smd1
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
 0.999
Snrpg
Small nuclear ribonucleoprotein G.
   
 0.999
snrpf
Small nuclear ribonucleoprotein F.
   
 0.999
smd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
snrpb
Small nuclear ribonucleoprotein-associated protein B.
   
 0.998
lsm7
U6 snRNA-associated Sm-like protein LSm7.
   
 0.998
PRPF6
Pre-mRNA-processing factor 6.
   
 0.997
lea1
U2 small nuclear ribonucleoprotein A.
   
 0.997
EFTUD2
U5 small nuclear ribonucleoprotein component.
   
 0.996
A0H81_03558
Uncharacterized protein.
   
 0.995
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.