STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VIP2Putative NOT transcription complex subunit VIP2. (615 aa)    
Predicted Functional Partners:
not1
General negative regulator of transcription subunit 1.
   
 0.987
rcd1
Cell differentiation protein rcd1.
    
 0.986
Cnot7
CCR4-NOT transcription complex subunit 7.
   
 0.986
not3
General negative regulator of transcription subunit 3.
    
 0.986
A0H81_04826
RING-type domain-containing protein.
    
 0.983
CCR4_1
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 0.961
CCR4_0
Glucose-repressible alcohol dehydrogenase transcriptional effector.
    
 0.961
A0H81_05284
Uncharacterized protein.
    
 0.958
doa10
ERAD-associated E3 ubiquitin-protein ligase doa10.
    
 
 0.914
ubc7
Ubiquitin-conjugating enzyme E2; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.914
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.