STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lig4DNA ligase 4. (1047 aa)    
Predicted Functional Partners:
ku80
ATP-dependent DNA helicase II subunit 2.
   
 0.970
KU70
ATP-dependent DNA helicase II subunit 1.
   
 0.969
pcn1_0
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.913
pcn1_1
Proliferating cell nuclear antigen.
   
 0.913
A0H81_07114
Uncharacterized protein.
  
 0.867
A0H81_02671
Uncharacterized protein.
  
 0.867
POLM
DNA-directed DNA/RNA polymerase mu.
  
 0.809
Poll
DNA polymerase lambda.
  
 0.809
ETR1
Putative trans-2-enoyl-CoA reductase, mitochondrial.
 
   
  0.782
Dclre1b
5' exonuclease Apollo.
   
 0.776
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.