STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oxdC_2Oxalate decarboxylase OxdC. (521 aa)    
Predicted Functional Partners:
MDH1_1
Malate dehydrogenase, mitochondrial; Belongs to the LDH/MDH superfamily.
   
  0.814
MDH1_0
Malate dehydrogenase, cytoplasmic.
   
  0.814
PCK1
Phosphoenolpyruvate carboxykinase [ATP].
    
  0.797
FMDH
Formate dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of formate to carbon dioxide. Formate oxidation is the final step in the methanol oxidation pathway in methylotrophic microorganisms. Has a role in the detoxification of exogenous formate in non-methylotrophic organisms. Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. FDH subfamily.
    
 0.788
pyc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
    
  0.781
nuc-2
Ankyrin repeat protein nuc-2.
    
 0.710
ppp6c
Serine/threonine-protein phosphatase.
    
  0.646
UBIQ
Ubiquitin.
    
  0.620
rga3_0
Putative Rho-type GTPase-activating protein 3.
    
 0.606
rga3_1
Putative Rho-type GTPase-activating protein 3.
    
 0.606
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.