STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phd1Histone deacetylase phd1. (567 aa)    
Predicted Functional Partners:
leo1
RNA polymerase-associated protein LEO1.
    
 0.988
HAT2
Histone acetyltransferase type B subunit 2.
   
 0.967
A0H81_12347
SANT domain-containing protein.
    
 0.959
Tbl1xr1
F-box-like/WD repeat-containing protein TBL1XR1.
   
 0.959
EAF3
Chromatin modification-related protein EAF3.
    
 0.956
mit1
Chromatin remodeling factor mit1.
   
 0.933
A0H81_13750
Uncharacterized protein.
    
 0.901
A0H81_13406
Uncharacterized protein.
   
 0.901
A0H81_12973
Uncharacterized protein.
    
 0.901
sfh1
Chromatin structure-remodeling complex subunit sfh1.
   
 0.901
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.