A0H81_04959 protein (Grifola frondosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0H81_04959

MYND-type domain-containing protein. (515 aa)

Predicted Functional Partners:

FIE

0.722

HAT2

0.704

Rbbp5

0.689

ash2

0.689

HTZ1

0.660

Kdm4d

0.645

A0H81_09997

0.635

A0H81_05215

0.634

A0H81_13125

0.604

H4.1_2

0.604

Your Current Organism:

Grifola frondosa

NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0H81_04959	A0H81_05215	A0A1C7MED2	A0A1C7MBR2	MYND-type domain-containing protein.	Uncharacterized protein.	0.634
A0H81_04959	A0H81_09997	A0A1C7MED2	A0A1C7LZV6	MYND-type domain-containing protein.	Uncharacterized protein.	0.635
A0H81_04959	A0H81_13125	A0A1C7MED2	A0A1C7LQF8	MYND-type domain-containing protein.	F-box domain-containing protein.	0.604
A0H81_04959	FIE	A0A1C7MED2	A0A1C7MR83	MYND-type domain-containing protein.	Polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM.	0.722
A0H81_04959	H4.1_2	A0A1C7MED2	A0A1C7LQL9	MYND-type domain-containing protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.604
A0H81_04959	HAT2	A0A1C7MED2	A0A1C7MP26	MYND-type domain-containing protein.	Histone acetyltransferase type B subunit 2.	0.704
A0H81_04959	HTZ1	A0A1C7MED2	A0A1C7MHN6	MYND-type domain-containing protein.	Histone H2A; Belongs to the histone H2A family.	0.660
A0H81_04959	Kdm4d	A0A1C7MED2	A0A1C7M8L1	MYND-type domain-containing protein.	Lysine-specific demethylase 4D.	0.645
A0H81_04959	Rbbp5	A0A1C7MED2	A0A1C7M4X6	MYND-type domain-containing protein.	Retinoblastoma-binding protein 5.	0.689
A0H81_04959	ash2	A0A1C7MED2	A0A1C7MGC4	MYND-type domain-containing protein.	Set1 complex component ash2.	0.689
A0H81_05215	A0H81_04959	A0A1C7MBR2	A0A1C7MED2	Uncharacterized protein.	MYND-type domain-containing protein.	0.634
A0H81_05215	A0H81_09997	A0A1C7MBR2	A0A1C7LZV6	Uncharacterized protein.	Uncharacterized protein.	0.655
A0H81_05215	A0H81_13125	A0A1C7MBR2	A0A1C7LQF8	Uncharacterized protein.	F-box domain-containing protein.	0.759
A0H81_05215	H4.1_2	A0A1C7MBR2	A0A1C7LQL9	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.759
A0H81_05215	HAT2	A0A1C7MBR2	A0A1C7MP26	Uncharacterized protein.	Histone acetyltransferase type B subunit 2.	0.701
A0H81_05215	HTZ1	A0A1C7MBR2	A0A1C7MHN6	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.719
A0H81_05215	Kdm4d	A0A1C7MBR2	A0A1C7M8L1	Uncharacterized protein.	Lysine-specific demethylase 4D.	0.668
A0H81_05215	Rbbp5	A0A1C7MBR2	A0A1C7M4X6	Uncharacterized protein.	Retinoblastoma-binding protein 5.	0.713
A0H81_05215	ash2	A0A1C7MBR2	A0A1C7MGC4	Uncharacterized protein.	Set1 complex component ash2.	0.710
A0H81_09997	A0H81_04959	A0A1C7LZV6	A0A1C7MED2	Uncharacterized protein.	MYND-type domain-containing protein.	0.635