STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTCA_0RNA 3'-terminal phosphate cyclase. (160 aa)    
Predicted Functional Partners:
A0H81_00261
Putative U3 small nucleolar RNA-associated protein 18.
   
 0.987
utp4
U3 small nucleolar RNA-associated protein 4.
   
 0.987
utp5
U3 small nucleolar RNA-associated protein 5.
   
 0.984
bms1
Ribosome biogenesis protein bms1.
   
 0.982
nol6
U3 small nucleolar RNA-associated protein 22.
   
 0.982
wdr75
WD repeat-containing protein 75.
   
 0.981
IMP3
U3 small nucleolar ribonucleoprotein IMP3.
   
 0.980
RRP7
Ribosomal RNA-processing protein 7.
   
 0.978
UTP10
U3 small nucleolar RNA-associated protein 10.
   
 0.976
BYSL
Bystin.
   
 
 0.971
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.