STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PAO_0Polyamine oxidase. (505 aa)    
Predicted Functional Partners:
TRP-1_0
Tryptophan synthase.
     
 0.811
TRP-1_1
Tryptophan synthase; Belongs to the TrpA family.
     
 0.811
Kdm4d
Lysine-specific demethylase 4D.
   
 0.781
phd1
Histone deacetylase phd1.
    
 0.780
HDAC8
Histone deacetylase 8.
    
 0.780
hdac8
Histone deacetylase 8; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.780
RPD3
Histone deacetylase RPD3.
    
 0.780
HAT2
Histone acetyltransferase type B subunit 2.
    
 0.773
HTB1
Histone H2B; Belongs to the histone H2B family.
    
  0.772
htbA_0
Histone H2B; Belongs to the histone H2B family.
    
  0.772
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.