STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATAD3B_0ATPase family AAA domain-containing protein 3B. (741 aa)    
Predicted Functional Partners:
ubx1
UBX domain-containing protein 1.
   
 0.941
ubxn1
UBX domain-containing protein 1.
    
 0.923
UBX3
UBX domain-containing protein 3.
    
 0.920
yod1
Ubiquitin thioesterase OTU1.
   
 0.919
yos9
Protein OS-9.
    
 0.904
ATXN3L
Putative ataxin-3-like protein.
    
 0.898
png-1
Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase.
    
 0.894
A0H81_00415
Uncharacterized protein.
   
 0.891
NPL4
Nuclear protein localization protein 4.
   
 0.891
CPR1_1
Proteasome subunit beta.
   
 0.890
Your Current Organism:
Grifola frondosa
NCBI taxonomy Id: 5627
Other names: G. frondosa, maitake
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