Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RNAN_0819 | cheY | RNAN_0819 | RNAN_0820 | Plasma glutamate carboxypeptidase. | Chemotaxis protein CheY homolog. | 0.532 |
RNAN_0819 | hlyU | RNAN_0819 | RNAN_0821 | Plasma glutamate carboxypeptidase. | Transcriptional activator hlyU. | 0.432 |
birA | hlyU | RNAN_3788 | RNAN_0821 | BirA family transcriptional regulator, biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | Transcriptional activator hlyU. | 0.456 |
birA | nadR | RNAN_3788 | RNAN_2976 | BirA family transcriptional regulator, biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | HipB family transcriptional regulator, involved in the regulation of NAD biosynthesis. | 0.424 |
cheY | RNAN_0819 | RNAN_0820 | RNAN_0819 | Chemotaxis protein CheY homolog. | Plasma glutamate carboxypeptidase. | 0.532 |
cheY | hlyU | RNAN_0820 | RNAN_0821 | Chemotaxis protein CheY homolog. | Transcriptional activator hlyU. | 0.613 |
copA-2 | copA-3 | RNAN_2731 | RNAN_3579 | Cu2+-exporting ATPase. | Cu2+-exporting ATPase. | 0.996 |
copA-2 | hlyU | RNAN_2731 | RNAN_0821 | Cu2+-exporting ATPase. | Transcriptional activator hlyU. | 0.425 |
copA-3 | copA-2 | RNAN_3579 | RNAN_2731 | Cu2+-exporting ATPase. | Cu2+-exporting ATPase. | 0.996 |
copA-3 | hlyU | RNAN_3579 | RNAN_0821 | Cu2+-exporting ATPase. | Transcriptional activator hlyU. | 0.425 |
hlyU | RNAN_0819 | RNAN_0821 | RNAN_0819 | Transcriptional activator hlyU. | Plasma glutamate carboxypeptidase. | 0.432 |
hlyU | birA | RNAN_0821 | RNAN_3788 | Transcriptional activator hlyU. | BirA family transcriptional regulator, biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.456 |
hlyU | cheY | RNAN_0821 | RNAN_0820 | Transcriptional activator hlyU. | Chemotaxis protein CheY homolog. | 0.613 |
hlyU | copA-2 | RNAN_0821 | RNAN_2731 | Transcriptional activator hlyU. | Cu2+-exporting ATPase. | 0.425 |
hlyU | copA-3 | RNAN_0821 | RNAN_3579 | Transcriptional activator hlyU. | Cu2+-exporting ATPase. | 0.425 |
hlyU | nadR | RNAN_0821 | RNAN_2976 | Transcriptional activator hlyU. | HipB family transcriptional regulator, involved in the regulation of NAD biosynthesis. | 0.452 |
nadR | birA | RNAN_2976 | RNAN_3788 | HipB family transcriptional regulator, involved in the regulation of NAD biosynthesis. | BirA family transcriptional regulator, biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon. | 0.424 |
nadR | hlyU | RNAN_2976 | RNAN_0821 | HipB family transcriptional regulator, involved in the regulation of NAD biosynthesis. | Transcriptional activator hlyU. | 0.452 |