STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNAN_0935Collagenase. (330 aa)    
Predicted Functional Partners:
RNAN_0936
Collagenase.
 
 
 0.987
RNAN_0934
SCP-2 sterol transfer family protein.
 
  
 0.928
hemN-2
Oxygen-independent coproporphyrinogen-III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.665
RNAN_1408
dTDP-6-deoxy-L-hexose 3-O-methyltransferase.
  
  
 0.636
RNAN_0941
Hypothetical protein.
 
     0.476
narX
Two-component system, NarL family, nitrate/nitrite sensor histidine kinase NarX.
  
    0.472
hemN
Oxygen-independent coproporphyrinogen-III oxidase; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
    0.469
mog
Molybdopterin adenylyltransferase.
       0.448
udk
Uridine kinase.
  
    0.405
Your Current Organism:
Rheinheimera nanhaiensis
NCBI taxonomy Id: 562729
Other names: R. nanhaiensis E407-8, Rheinheimera nanhaiensis E407-8, Rheinheimera nanhaiensis str. E407-8, Rheinheimera nanhaiensis strain E407-8, Rheinheimera sp. E407-8
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