Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RNAN_0362 | oadA1 | RNAN_0362 | RNAN_2453 | 3-methylcrotonyl-CoA carboxylase beta subunit. | Oxaloacetate decarboxylase alpha chain. | 0.902 |
RNAN_0362 | vllY | RNAN_0362 | RNAN_1503 | 3-methylcrotonyl-CoA carboxylase beta subunit. | Hemolysin vllY. | 0.896 |
RNAN_1501 | hmgA | RNAN_1501 | RNAN_1502 | Hypothetical protein. | Homogentisate 1,2-dioxygenase. | 0.975 |
RNAN_1501 | maiA | RNAN_1501 | RNAN_1500 | Hypothetical protein. | Maleylacetoacetate isomerase. | 0.946 |
RNAN_1501 | phhA | RNAN_1501 | RNAN_1506 | Hypothetical protein. | Phenylalanine-4-hydroxylase. | 0.750 |
RNAN_1501 | phhB | RNAN_1501 | RNAN_1505 | Hypothetical protein. | 4a-hydroxytetrahydrobiopterin dehydratase. | 0.419 |
RNAN_1501 | vllY | RNAN_1501 | RNAN_1503 | Hypothetical protein. | Hemolysin vllY. | 0.963 |
aspC | hisC | RNAN_1474 | RNAN_1057 | Aspartate aminotransferase. | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.653 |
aspC | oadA1 | RNAN_1474 | RNAN_2453 | Aspartate aminotransferase. | Oxaloacetate decarboxylase alpha chain. | 0.781 |
aspC | phhA | RNAN_1474 | RNAN_1506 | Aspartate aminotransferase. | Phenylalanine-4-hydroxylase. | 0.769 |
aspC | phhB | RNAN_1474 | RNAN_1505 | Aspartate aminotransferase. | 4a-hydroxytetrahydrobiopterin dehydratase. | 0.608 |
aspC | vllY | RNAN_1474 | RNAN_1503 | Aspartate aminotransferase. | Hemolysin vllY. | 0.913 |
aspC | ybdL | RNAN_1474 | RNAN_2737 | Aspartate aminotransferase. | Methionine aminotransferase. | 0.652 |
hisC | aspC | RNAN_1057 | RNAN_1474 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Aspartate aminotransferase. | 0.653 |
hisC | phhA | RNAN_1057 | RNAN_1506 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Phenylalanine-4-hydroxylase. | 0.600 |
hisC | vllY | RNAN_1057 | RNAN_1503 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Hemolysin vllY. | 0.816 |
hisC | ybdL | RNAN_1057 | RNAN_2737 | Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | Methionine aminotransferase. | 0.808 |
hmgA | RNAN_1501 | RNAN_1502 | RNAN_1501 | Homogentisate 1,2-dioxygenase. | Hypothetical protein. | 0.975 |
hmgA | maiA | RNAN_1502 | RNAN_1500 | Homogentisate 1,2-dioxygenase. | Maleylacetoacetate isomerase. | 0.957 |
hmgA | phhA | RNAN_1502 | RNAN_1506 | Homogentisate 1,2-dioxygenase. | Phenylalanine-4-hydroxylase. | 0.929 |
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