Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RNAN_2701 | add | RNAN_2701 | RNAN_1693 | Hypothetical protein. | Adenosine deaminase. | 0.846 |
RNAN_2701 | deoD | RNAN_2701 | RNAN_3284 | Hypothetical protein. | Purine-nucleoside phosphorylase. | 0.719 |
RNAN_2701 | gsk | RNAN_2701 | RNAN_0297 | Hypothetical protein. | Inosine kinase. | 0.760 |
RNAN_2701 | guaA | RNAN_2701 | RNAN_0745 | Hypothetical protein. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.991 |
RNAN_2701 | guaB | RNAN_2701 | RNAN_0744 | Hypothetical protein. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.961 |
RNAN_2701 | purA | RNAN_2701 | RNAN_0786 | Hypothetical protein. | Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.574 |
RNAN_2701 | surE | RNAN_2701 | RNAN_3094 | Hypothetical protein. | 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.751 |
RNAN_3039 | add | RNAN_3039 | RNAN_1693 | HAD family hydrolase. | Adenosine deaminase. | 0.651 |
RNAN_3039 | apt | RNAN_3039 | RNAN_2363 | HAD family hydrolase. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.640 |
RNAN_3039 | deoD | RNAN_3039 | RNAN_3284 | HAD family hydrolase. | Purine-nucleoside phosphorylase. | 0.625 |
RNAN_3039 | gpt | RNAN_3039 | RNAN_3283 | HAD family hydrolase. | Xanthine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily. | 0.480 |
RNAN_3039 | gsk | RNAN_3039 | RNAN_0297 | HAD family hydrolase. | Inosine kinase. | 0.479 |
RNAN_3039 | guaA | RNAN_3039 | RNAN_0745 | HAD family hydrolase. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.896 |
RNAN_3039 | guaB | RNAN_3039 | RNAN_0744 | HAD family hydrolase. | IMP dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.888 |
RNAN_3039 | purA | RNAN_3039 | RNAN_0786 | HAD family hydrolase. | Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.888 |
RNAN_3039 | surE | RNAN_3039 | RNAN_3094 | HAD family hydrolase. | 5'-nucleotidase; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.890 |
add | RNAN_2701 | RNAN_1693 | RNAN_2701 | Adenosine deaminase. | Hypothetical protein. | 0.846 |
add | RNAN_3039 | RNAN_1693 | RNAN_3039 | Adenosine deaminase. | HAD family hydrolase. | 0.651 |
add | apt | RNAN_1693 | RNAN_2363 | Adenosine deaminase. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.799 |
add | deoD | RNAN_1693 | RNAN_3284 | Adenosine deaminase. | Purine-nucleoside phosphorylase. | 0.663 |
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