Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RNAN_2016Serine/threonine protein kinase, bacterial. (669 aa)    
Predicted Functional Partners:
RNAN_2023
Protein phosphatase.
 
 
 0.932
impM
Type VI secretion system protein ImpM.
 
  
 0.881
RNAN_2017
Type VI secretion system protein.
 
  
 0.880
RNAN_0281
Hypothetical protein.
    
 0.853
RNAN_0938
Protein serine/threonine phosphatase.
 
0.853
RNAN_2020
Type VI secretion system protein ImpK.
 
  
 0.849
arcB
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
    
 0.843
impE
Type VI secretion system protein ImpE.
 
    0.820
RNAN_2021
Type VI secretion system protein ImpL.
 
  
 0.771
RNAN_2018
Type VI secretion system protein VasD.
 
  
 0.762
Your Current Organism:
Rheinheimera nanhaiensis
NCBI taxonomy Id: 562729
Other names: R. nanhaiensis E407-8, Rheinheimera nanhaiensis E407-8, Rheinheimera nanhaiensis str. E407-8, Rheinheimera nanhaiensis strain E407-8, Rheinheimera sp. E407-8
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.