Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RNAN_1409 | RNAN_2837 | RNAN_1409 | RNAN_2837 | Hypothetical protein. | Oxoisovalerate dehydrogenase subunits alpha/beta. | 0.999 |
RNAN_1409 | gltB | RNAN_1409 | RNAN_2422 | Hypothetical protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.974 |
RNAN_1409 | pdhA | RNAN_1409 | RNAN_1411 | Hypothetical protein. | Pyruvate dehydrogenase E1 component subunit alpha. | 0.999 |
RNAN_1409 | sthA | RNAN_1409 | RNAN_3003 | Hypothetical protein. | Soluble pyridine nucleotide transhydrogenase; Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | 0.893 |
RNAN_1409 | sucA | RNAN_1409 | RNAN_2980 | Hypothetical protein. | 2-oxoglutarate dehydrogenase E1 component. | 0.983 |
RNAN_2837 | RNAN_1409 | RNAN_2837 | RNAN_1409 | Oxoisovalerate dehydrogenase subunits alpha/beta. | Hypothetical protein. | 0.999 |
RNAN_2837 | aceF | RNAN_2837 | RNAN_0054 | Oxoisovalerate dehydrogenase subunits alpha/beta. | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.999 |
RNAN_2837 | bkdB | RNAN_2837 | RNAN_2240 | Oxoisovalerate dehydrogenase subunits alpha/beta. | 2-oxoisovalerate dehydrogenase E2 component; Dihydrolipoyl transacylase. | 0.999 |
RNAN_2837 | gltB | RNAN_2837 | RNAN_2422 | Oxoisovalerate dehydrogenase subunits alpha/beta. | Glutamate synthase (NADPH/NADH) large chain. | 0.734 |
RNAN_2837 | pdhA | RNAN_2837 | RNAN_1411 | Oxoisovalerate dehydrogenase subunits alpha/beta. | Pyruvate dehydrogenase E1 component subunit alpha. | 0.999 |
RNAN_2837 | sthA | RNAN_2837 | RNAN_3003 | Oxoisovalerate dehydrogenase subunits alpha/beta. | Soluble pyridine nucleotide transhydrogenase; Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | 0.993 |
RNAN_2837 | sucA | RNAN_2837 | RNAN_2980 | Oxoisovalerate dehydrogenase subunits alpha/beta. | 2-oxoglutarate dehydrogenase E1 component. | 0.887 |
RNAN_2837 | sucB | RNAN_2837 | RNAN_2979 | Oxoisovalerate dehydrogenase subunits alpha/beta. | 2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). | 0.999 |
aceF | RNAN_2837 | RNAN_0054 | RNAN_2837 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Oxoisovalerate dehydrogenase subunits alpha/beta. | 0.999 |
aceF | gltB | RNAN_0054 | RNAN_2422 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Glutamate synthase (NADPH/NADH) large chain. | 0.946 |
aceF | pdhA | RNAN_0054 | RNAN_1411 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Pyruvate dehydrogenase E1 component subunit alpha. | 0.999 |
aceF | sthA | RNAN_0054 | RNAN_3003 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | Soluble pyridine nucleotide transhydrogenase; Conversion of NADPH, generated by peripheral catabolic pathways, to NADH, which can enter the respiratory chain for energy generation; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. | 0.927 |
aceF | sucA | RNAN_0054 | RNAN_2980 | Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 2-oxoglutarate dehydrogenase E1 component. | 0.991 |
bkdB | RNAN_2837 | RNAN_2240 | RNAN_2837 | 2-oxoisovalerate dehydrogenase E2 component; Dihydrolipoyl transacylase. | Oxoisovalerate dehydrogenase subunits alpha/beta. | 0.999 |
bkdB | gltB | RNAN_2240 | RNAN_2422 | 2-oxoisovalerate dehydrogenase E2 component; Dihydrolipoyl transacylase. | Glutamate synthase (NADPH/NADH) large chain. | 0.946 |
page 1 of 4